Learning objectives
The goal of this basic training workshop is to provide a hands-on experience using the Bwb for genomics data analysis. You are expected to follow training videos and use Bwb to perform analytical tasks.
By completing this basic training workshop, you will:
- Gain basic understanding of the Bwb platform.
- Acquire hands-on experience using Bwb to deploy genomic workflows.
- Learn how to adjust input parameters in a simple RNA-seq workflow.
Overview of basic training
We will walk through the following steps:
- Lecture: A quick introduction to Bio-depot-workflow-builder (Bwb)
- How to use the pre-configured GitPod environment, which is an open-source cloud environment. You will be able to run example workflows in Bwb without any set up on your own computer.
- How to load workflows in Bwb. This section includes a demo video illustrating how to deploy a simple RNA-seq workflow using our pre-configured GitPod.
- Hands-on exercise: RNA seq workflow using salmon
No prior programming experience or technical skills are required in this basic training. No installation on your local computer is needed.